AT4G13710.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pectin lyase-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pectin lyase-like superfamily protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectate lyase family protein (TAIR:AT3G24230.1). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:7962550..7966012 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49892.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.95 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||||||
| Length | 451 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASSSQKLIS VCVAVLVVLA LTAMIFRNSE ISLSRKLKTE EFQSLNSSTM AATRLDGEPQ QQQHAVADDP DMVADEVAKL VQMSEQNRTA RRKLGFFSCG 101: TGNPIDDCWR CDRNWHKNRK RLADCGIGFG RNAIGGRDGR FYIVTDPTDE DVVNPKPGTL RHAVIQEEPL WIVFKRDMVI ELKQELIMNS FKTIDARGSN 201: VHIANGACIT IQFITNVIIH GLHIHDCKPT GNAMVRSSPS HFGWRTMADG DAVSIFGSSH IWIDHNSLSH CADGLVDAVM GSTAITVSNN HFTHHNEVML 301: LGHSDSYTKD KLMQVTIAYN HFGEGLVQRM PRCRHGYFHV VNNDYTHWEM YAIGGSAEPT INSQGNRYAA PMDRFAKEVT KRVETDASEW KKWNWRSEGD 401: LLLNGAFFRP SGAGASASYG RASSLAAKPS SMVDTITSTA GALGCRKGRP C |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)