AT4G13490.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
|||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : RING/U-box superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G47700.1); Has 422 Blast hits to 422 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 32; Plants - 236; Viruses - 3; Other Eukaryotes - 112 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:7839137..7840284 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 24905.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.13 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||||||||||
| Length | 226 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLESDIKES KRVVEPFDDD DCAVCLEPLA NDADERTVVK LRCSHKFHLD CVGSSFNIKN KMECPCCRQI EKGKWLFAEP VDQLEEDDMS PLDMLTNMVS 101: PSFLHIDDGI FTNIASVLFP NALNQISNNA NVSSNPLGEP RNTLLDTRMQ RQVDEHVAST VDSERRLPDM LFELHDRTGG SGPSGYGRER SGGEGGENSC 201: GGEAVAEEDQ VGEAAEGAEM MDNLNF |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)