AT4G13400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.989 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT3G63290.1); Has 390 Blast hits to 389 proteins in 142 species: Archae - 0; Bacteria - 106; Metazoa - 14; Fungi - 122; Plants - 74; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:7787822..7791149 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39989.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.28 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||
| Length | 357 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLSSDSTVP TVSTVTISYS ELKESNIDLS ARIEEGFGPN GLGILSVKDV PGYSALRQNL LQLAPRLAGL PEEVKRELED PHSRYNFGWS HGKEKLESGK 101: LDMLKGSYYA NPLQDVPTSN SYEIQRYPSY CGSNIWPRNS LPELEGAFKA LGKLMFEVGL MVAYHCDQYV SKGIKQHEKQ NLEKILLGSR CHKGRLLYYF 201: PAQESSTHDN DSISSWCGWH TDHGSLTGLT RAIFSRDSVE VPCPDPASGL YIQTRSGQIV KVVYGEDEIA YQIGETTSIL SSGYLCATPH CVRAPQGEEA 301: RGLERSTFAL FMQPDWDQKL TFPKEVTIHE ELCLSDEVLT FGEYTEKLLN KYYDTKP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)