AT4G13300.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : terpenoid synthase 13 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Catalyzes the conversion of farnesyl diphosphate to (Z)-gamma-bisabolene and the additional minor products E-nerolidol and alpha-bisabolol. Expressed in cortex and sub-epidermal layers of roots, leaf hydathodes and flower stigmata. Induced by wounding. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
terpenoid synthase 13 (TPS13); CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpenoid synthase 12 (TAIR:AT4G13280.1); Has 1681 Blast hits to 1656 proteins in 182 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 0; Plants - 1663; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:7742871..7746363 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64148.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.34 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 554 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESQTKFDYE SLAFTKLSHS QWTDYFLSVP IDDSELDAIT REIDIIKPEV RKLLSSKGDD ETSKRKVLLI QSLLSLGLAF HFENEIKDIL EDAFRRIDDI 101: TGDENDLSTI SIMFRVFRTY GHNLPSSVFK RFTGDDGKFE RSLTEDAKGI LSLYEAAHLG TTTDYILDEA LEFTSSHLKS LLVGGMCRPH ILRLIRNTLY 201: LPQRWNMEAV IAREYISFYE QEEDHDKMLL RLAKLNFKLL QLHYIKELKT FIKWWMELGL TSKWPSQFRE RIVEAWLAGL MMYFEPQFSG GRVIAAKFNY 301: LLTILDDACD HYFSIPELTR LVDCVERWNH DGIHTLEDIS RIIFKLALDV FDDIGRGVRS KGCSYYLKEM LEELKILVRA NLDLVKWARG NQLPSFEEHV 401: EVGGIALTTY ATLMYSFVGM GEAVGKEAYE WVRSRPRLIK SLAAKGRLMD DITDFESDMS NGFAANAINY YMKQFVVTKE EAILECQKMV VDINKIVNEE 501: LLKTTTVPRR VLKQALNFGR LLEVLYTKSD DIYNCSEGKL KEYIVTLLID PIHL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)