AT4G13250.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.597 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NAD(P)-binding Rossmann-fold superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a chlorophyll b reductase involved in the degradation of chlorophyll b and LHCII (light harvesting complex II). | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
NON-YELLOW COLORING 1 (NYC1); CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NYC1-like (TAIR:AT5G04900.1). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:7684417..7686691 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54660.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.92 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||
| Length | 494 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTTLTKIQVY PQVLEHRLFF RDPIRVGSRL TCRERSNRVY VHRCEKKVER KRKVEKFKGN GSWDSLKSGF LGFSKLGFLS KDEYNQKVEN LEMVFSSVAV 101: QIARYIVTMT STGAILLIGF QLSGGDSSMN SLVWYSWLGG IIIGTMTGAN MVLEDHYRAG PRNVVITGRG LGKALAREFL LSGDRVIVTS RSSESVDMTV 201: KELEQNLKEI MSNASESARK KLSDAKVVGI ACDVCKPEDV EKLSNFAVKE LGSINIWINN AGTNKGFRPL LEFTEEDITQ IVSTNLIGSI LCTRGAMDVM 301: SRQHSGGHIF NMDGAGSGGS STPLTAVYGS TKCGLRQFHG SIVKESQKTN VGLHTASPGM VLTELLLSGS SIKNKQMFNI ICELPETVAR TLVPRMRVVK 401: GSGKAVNYLT PPRILLAIVT SWLRRGRWFD DQGRALYAAE ADRLRNWAEN RTRLSLTDAM EMYTENTWVS VFSLSVVCAF IILQSTTPSS FPGT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)