AT4G13100.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/U-box superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G25030.2); Has 548 Blast hits to 540 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 226; Fungi - 17; Plants - 201; Viruses - 15; Other Eukaryotes - 89 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:7636547..7637507 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 28502.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.05 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||
| Length | 256 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIQMDGGDRL RVTLLDRMST VENGRSSVTL EDILMAETSS FRSLTTPTTP VRNHSSSSLL DVMRRERRRD KTAWKSLRDK LRLKRTATGW ISSNPIPTLD 101: NHILTPDNDS HRFNRLGFLL TNSETNRSSR DVSDAAEEAA EREGRLRLGT VLAAEREPPR MSLMELLEDN DGHMYELSAR DEVEVEGRDG CDGGGEAVAV 201: TGAAELGCCV CMVRSKGAAF IPCGHTFCRL CSRELWVQRG NCPLCNTAIL QVLDIF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)