AT4G12920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Eukaryotic aspartyl protease family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT4G30040.1); Has 1610 Blast hits to 1605 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 43; Plants - 1530; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:7568286..7569455 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43310.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.29 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||||||
| Length | 389 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKTTMNFVFL FFLPLLINAK PKRVTLHIPL VHNGANFYDS KVVSLPLSSP HSQRGLAFMA EIHFGSPQKK QFLHMDTGSS LTWTQCFPCS DCYAQKIYPK 101: YRPAASITYR DAMCEDSHPK SNPHFAFDPL TRICTYQQHY LDETNIKGTL AQEMITVDTH DGGFKRVHGV YFGCNTLSDG SYFTGTGILG LGVGKYSIIG 201: EFGSKFSFCL GEISEPKASH NLILGDGANV QGHPTVINIT EGHTIFQLES IIVGEEITLD DPVQVFVDTG STLSHLSTNL YYKFVDAFDD LIGSRPLSYE 301: PTLCYKADTI ERLEKMDVGF KFDVGAELSV NIHNIFIQQG PPEIRCLAIQ NNKESFSHVI IGVIAMQGYN VGYDLSAKTA YINKQDCDM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)