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AT4G12890.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Gamma interferon responsive lysosomal thiol (GILT) reductase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Gamma interferon responsive lysosomal thiol (GILT) reductase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Gamma interferon inducible lysosomal thiol reductase GILT (InterPro:IPR004911); BEST Arabidopsis thaliana protein match is: Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (TAIR:AT4G12900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111IDTeggNOG:KOG3160EMBL:BT026411EMBL:CP002687
EnsemblPlants:AT4G12890EnsemblPlants:AT4G12890.1entrez:826901Gene3D:3.40.30.10
GeneID:826901Gramene:AT4G12890.1HOGENOM:HOG000238423InterPro:IPR004911
InterPro:IPR012336KEGG:ath:AT4G12890OMA:QCMELNAPfam:PF03227
PhylomeDB:Q0V809Proteomes:UP000006548Reactome:R-ATH-2132295RefSeq:NP_567395.1
STRING:3702.AT4G12890.1TAIR:AT4G12890TMHMM:TMhelixUniGene:At.20544
UniGene:At.43237UniProt:Q0V809
Coordinates (TAIR10) chr4:+:7546411..7547476
Molecular Weight (calculated) 26302.60 Da
IEP (calculated) 7.79
GRAVY (calculated) -0.19
Length 232 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSATKFV DLFPCLFLAC LFVFTYSNNL VVAENSNKVK INLYYESLCP YCQNFIVDDL GKIFDSDLLK ITDLKLVPFG NAHISNNLTI TCQHGEEECK
101: LNALEACGIR TLPDPKLQYK FIRCVEKDTN EWESCVKKSG REKAINDCYN GDLSQKLILG YAKLTSSLKP KHEYVPWVTL NGKPLYDNYH NLVAQVCKAY
201: KGKDLPKLCS SSVLYERKVS KFQVSYVDEA IN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)