AT4G12820.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.894 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : F-box family protein with a domain of unknown function (DUF295) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G12810.1); Has 348 Blast hits to 337 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 348; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:7527048..7528890 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51000.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.58 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||
| Length | 442 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAPLNSQAAG EEESNYQCRF PRFMHLSWKR PYLTRVFDLA VIQKKQKKEM SDSEEKKCND DSKQPVLVLD LLRSILERLS FVDFHRGRCI SLEWYSASES 101: CLAVKNPTSP WIILFPSENV ESKNDSCKLY NPRDHSSYIV RDLGFDLARS RCLASSGSWF LMLDHRTDFH ILNLFTRVRI PLPPLESTGD GNVFKRVYEN 201: VSDGSCIKID NAVLWVDEKR RDYLVVWNIS RLFGYHKKGD ENYSWKVFKP LKKNDCCIDM AFKENKLYVL SVTRKVTVYD FSGGDSPVKC ATFPSLRFRN 301: GYSYNTQGCH YKVAVTLSGE VLIIVAKVEP YPRVECFFAV YKMDHNSSGY ERISLGGEAL LLDLGITVEA NCMKNCIYFS NDQFHRYNGK SLCDDSNKNG 401: ICVYHIRSRY VVQVFEHLTA SSKIAFKDAR SFFPIFGGKW LL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)