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AT4G12740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : HhH-GPD base excision DNA repair family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HhH-GPD base excision DNA repair family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), DNA glycosylase (InterPro:IPR011257), NUDIX hydrolase domain (InterPro:IPR000086), HhH-GPD domain (InterPro:IPR003265); Has 55833 Blast hits to 29061 proteins in 2861 species: Archae - 372; Bacteria - 10631; Metazoa - 17750; Fungi - 4523; Plants - 1695; Viruses - 834; Other Eukaryotes - 20028 (source: NCBI BLink).
Protein Annotations
EC:3.2.2.-eggNOG:COG1194eggNOG:KOG2457EMBL:AL049640
EMBL:AL161534EMBL:CP002687EnsemblPlants:AT4G12740EnsemblPlants:AT4G12740.1
entrez:826886Gene3D:1.10.1670.10Gene3D:1.10.340.30Gene3D:3.90.79.10
GeneID:826886Genevisible:F4JRF4GO:GO:0003677GO:GO:0005634
GO:GO:0006284GO:GO:0016798GO:GO:0046872GO:GO:0051539
Gramene:AT4G12740.1hmmpanther:PTHR10359hmmpanther:PTHR10359:SF1InParanoid:F4JRF4
InterPro:IPR003265InterPro:IPR011257InterPro:IPR015797InterPro:IPR023170
InterPro:IPR029119KEGG:ath:AT4G12740KO:K03575ncoils:Coil
PaxDb:F4JRF4Pfam:F4JRF4Pfam:PF00730Pfam:PF14815
PIR:T06632PRIDE:F4JRF4PRO:PR:F4JRF4ProteinModelPortal:F4JRF4
Proteomes:UP000006548Reactome:R-ATH-110331Reactome:R-ATH-110357RefSeq:NP_193010.2
SMART:SM00478SMR:F4JRF4STRING:3702.AT4G12740.1SUPFAM:SSF48150
SUPFAM:SSF55811TAIR:AT4G12740UniGene:At.54294UniProt:F4JRF4
Coordinates (TAIR10) chr4:-:7494578..7497596
Molecular Weight (calculated) 72004.10 Da
IEP (calculated) 6.24
GRAVY (calculated) -0.44
Length 630 amino acids
Sequence (TAIR10)
(BLAST)
001: MACLLRVALN PTFERSTVAS QRQNPKTILS FHCKVSSFKT KTMSQSFAPR EKLMRKCREK KEAEREAERE AEREAEEEEK AEEAEAEADK EEAEEESEEE
101: EEEEEEEAEA EEEALGGDIE DLFSENETQK IRMGLLDWYD VNKRDLPWRN RRSESEKERR AYEVWVSEIM LQQTRVQTVM KYYKRWMQKW PTIYDLGQAS
201: LENLIVSRSR ELSFLRGNEK KEVNEMWAGL GYYRRARFLL EGAKMVVAGT EGFPNQASSL MKVKGIGQYT AGAIASIAFN EAVPVVDGNV IRVLARLKAI
301: SANPKDRLTA RNFWKLAAQL VDPSRPGDFN QSLMELGATL CTVSKPSCSS CPVSSQCRAF SLSEENRTIS VTDYPTKVIK AKPRHDFCCV CVLEIHNLER
401: NQSGGRFVLV KRPEQGLLAG LWEFPSVILN EEADSATRRN AINVYLKEAF RFHVELKKAC TIVSREELGE FVHIFTHIRR KVYVELLVVQ LTGGTEDLFK
501: GQAKDTLTWK CVSSDVLSTL GLTSAVRKVP PFRLQHIKRL SLDVMVEKEQ ILECRCIQWL KHTSKAYLFL MSHQIEQPYR GNENSHDLLL TLFFMLLSFY
601: SSCLALGIKF GDLGLKLNSL VSTEKSDGDV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)