AT4G12270.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Copper amine oxidase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Copper amine oxidase family protein; FUNCTIONS IN: quinone binding, primary amine oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT4G12290.1); Has 1119 Blast hits to 1117 proteins in 236 species: Archae - 14; Bacteria - 358; Metazoa - 19; Fungi - 372; Plants - 223; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:7297808..7299930 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51596.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.14 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 460 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEPKLSSRLF LLITTACFIL LFTSTNFSQA PSSTAKLFDC TKSSSSPFCA SRNFLFNKNT RPISKNIPKT KPKNHDHVSD TPNHPLDPLT VMEINKVRSI 101: LSSHALFASR VPHLLNSVVL EEPDKNLVRQ WEKGDQLPPR KASVIARVGG NSHLLIVDLS TSRVDQADSP VPESGYPIVT SEEMDSAASA PFSNADFNRT 201: INSRGVNLTD VICIPISSGW FGNKDDNTKR VTKIQCFSTQ DTPNFYMRPI EGLTLLFDLD TKRILEITDT GQSIPIPGST NTDYRYSTLP NHDKTRPLNT 301: ISLEQPRGPS FVIEDNHLVK WANWEFHLKP DPRAGLIMSQ VKIHDPDTQE TREVMYKGFV SELFVPYMDP SEAWYFKTYM DAGEYGFGLQ AMPLEPVAEP 401: KNLFIGPLND CPRNAVYMDG TFAAADGTPY VRENMICVFE SYAGDIAWRH TEYPVNGMPN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)