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AT4G12140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.426
plasma membrane 0.349
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G12150.1); Has 7725 Blast hits to 7711 proteins in 293 species: Archae - 0; Bacteria - 0; Metazoa - 2341; Fungi - 663; Plants - 3301; Viruses - 68; Other Eukaryotes - 1352 (source: NCBI BLink).
Protein Annotations
DNASU:826822eggNOG:COG5243eggNOG:KOG0802EMBL:AL049638
EMBL:AL161533EMBL:CP002687EnsemblPlants:AT4G12140EnsemblPlants:AT4G12140.1
entrez:826822Gene3D:3.30.40.10GeneID:826822GO:GO:0008270
Gramene:AT4G12140.1hmmpanther:PTHR22763hmmpanther:PTHR22763:SF63HOGENOM:HOG000153211
InterPro:IPR001841InterPro:IPR011016InterPro:IPR013083KEGG:00220+6.3.2.-
KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-KEGG:ath:AT4G12140OMA:NDPIPKP
Pfam:PF13639Pfscan:PS50089PhylomeDB:Q9SZ79PIR:T06621
PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_192951.1SMART:SM00184
SMART:SM00744SMR:Q9SZ79STRING:3702.AT4G12140.1SUPFAM:SSF57850
TAIR:AT4G12140UniGene:At.65367unipathway:UPA00143UniProt:Q9SZ79
Coordinates (TAIR10) chr4:-:7266546..7267154
Molecular Weight (calculated) 22520.10 Da
IEP (calculated) 7.53
GRAVY (calculated) -0.13
Length 202 amino acids
Sequence (TAIR10)
(BLAST)
001: MNDPIPKPIV SVQVQAVKVS TNSIFLIVNT IKDEILINPV TGHRAETSTP LSYKSLPINF SLPSCSHHHI QSLLHDQLHS DDNWLCDHLV PKISTAAINA
101: GFMNNGVELT VGVTVTYQYV HVEETSSKES RMVRLGSMKA EELKSFNMET DSCSICLQSL VSSSKTGPTR MSCSHVFHSS CLVEWLKRKN TCPMCRTVLY
201: DR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)