AT4G11720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.333 plasma membrane 0.333 vacuole 0.333 ASURE: endoplasmic reticulum,plasma membrane,vacuole What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hapless 2 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes HAP2 with the following predicted motifs: an N-terminal secretion signal, a single transmembrane domain and a C-terminal histidine-rich domain. HAP2 is expressed only in the haploid sperm and is required for pollen tube guidance and fertilization. Predominantly localized to sperm endoplasmic reticulum membranes. May also reside in other endomembranes, including the plasma membrane. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
HAPLESS 2 (HAP2); CONTAINS InterPro DOMAIN/s: Generative cell specific-1, HAP2-GCS1 (InterPro:IPR018928); Has 2122 Blast hits to 1565 proteins in 270 species: Archae - 6; Bacteria - 421; Metazoa - 806; Fungi - 82; Plants - 227; Viruses - 5; Other Eukaryotes - 575 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:7063291..7066784 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 80509.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.60 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 705 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVNAILMACI LAGIFVGMFN EVDGIQILSK SKLEKCEKTS DSGNLNCSTK IVLNLAVPSG SSGGEASIVA EIVEVEDNSS SNMQTVRIPP VITVNKSAAY 101: ALYDLTYIRD VPYKPQEYHV TTRKCEHDAG PDIVQICERL RDEKGNVLEQ TQPICCPCGP QRRMPSSCGD IFDKMIKGKA NTAHCLRFPG DWFHVFGIGQ 201: RSLGFSVRVE LKTGTRVSEV IIGPENRTAT ANDNFLKVNL IGDFGGYTSI PSFEDFYLVI PREAAEAGQP GSLGANYSMW MLLERVRFTL DGLECNKIGV 301: GYEAFNTQPN FCSSPYWSCL HNQLWNFRES DINRIDRHQL PLYGLEGRFE RINQHPNAGP HSFSIGVTET LNTNLMIELR ADDIEYVFQR SPGKIINIAI 401: PTFEALTQFG VAAVIIKNTG EVEASYSLTF DCSKGVAFVE EQFFIIKPKA VTTRSFKLYP TKDQAAKYIC TAILKDSQFS EVDRAECQFS TTATVLDNGT 501: QVTNPFQIPE TQPKGFFDSI RILWTKIING LVDFITGDTC RNKCSSFFDF SCHIQYVCLS WMVMFGLLLA LFPITCLLLW LLHQKGLFDP CYDWWEDHFD 601: LDHHRRLLPS RADVVNRHHH HHKHRHHHNH HRRTHQRHKH HHGQDDDVLQ KMMLERDHSD SHYYHQLHRV HKDSKQKQRR RAKHGIVLPR DVHVERQRKQ 701: RLRES |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)