AT4G11690.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.930 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR-like) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G39710.1); Has 58414 Blast hits to 14966 proteins in 309 species: Archae - 5; Bacteria - 45; Metazoa - 1145; Fungi - 1103; Plants - 53991; Viruses - 0; Other Eukaryotes - 2125 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:7056254..7057954 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63789.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.87 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 566 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAKSQKTLV LLANLIKFPP LKAFSLLNSP NFHEFQHTHE SISILLRLLL SGNLFSHAQS LLLQVISGKI HSQFFTSSSL LHYLTESETS KTKFRLYEVI 101: INSYVQSQSL NLSISYFNEM VDNGFVPGSN CFNYLLTFVV GSSSFNQWWS FFNENKSKVV LDVYSFGILI KGCCEAGEIE KSFDLLIELT EFGFSPNVVI 201: YTTLIDGCCK KGEIEKAKDL FFEMGKLGLV ANERTYTVLI NGLFKNGVKK QGFEMYEKMQ EDGVFPNLYT YNCVMNQLCK DGRTKDAFQV FDEMRERGVS 301: CNIVTYNTLI GGLCREMKLN EANKVVDQMK SDGINPNLIT YNTLIDGFCG VGKLGKALSL CRDLKSRGLS PSLVTYNILV SGFCRKGDTS GAAKMVKEME 401: ERGIKPSKVT YTILIDTFAR SDNMEKAIQL RLSMEELGLV PDVHTYSVLI HGFCIKGQMN EASRLFKSMV EKNCEPNEVI YNTMILGYCK EGSSYRALKL 501: LKEMEEKELA PNVASYRYMI EVLCKERKSK EAERLVEKMI DSGIDPSTSI LSLISRAKND SHVSSK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)