AT4G11380.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.958 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Adaptin family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Adaptin family protein; FUNCTIONS IN: protein transporter activity, clathrin binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Armadillo-like helical (InterPro:IPR011989), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553), Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomain (InterPro:IPR013037), Clathrin adaptor, beta-adaptin, appendage, C-terminal subdomain (InterPro:IPR015151), Beta2-adaptin/TATA-box binding, C-terminal (InterPro:IPR012295), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Adaptor protein complex, beta subunit (InterPro:IPR016342), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041); BEST Arabidopsis thaliana protein match is: Adaptin family protein (TAIR:AT4G23460.1). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:6920608..6925444 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 101921.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.65 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 916 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSGHDSKYFS TTKKGEIPEL KEELNSQYKC DDSVHFSVTD WDIVTLVKLR LDKRKDAVKK VIAAMTVGKD VSSLFTDVVN CMQTENLELK KLVYLYLINY 101: AKSQPDLAIL AVNTFVKDSQ DPNPLIRALA VRTMGCIRVD KITEYLCDPL QKCLKDDDPY VRKTAAICVA KLFDINAELV EDRGFLEALK DLISDNNPMV 201: VANAVAALAE IQENSSSPIF EINSTTLTKL LTALNECTEW GQVFILDALS KYKAADPREA ENIVERVTPR LQHANCAVVL SAVKMILQQM ELITSTDVIR 301: NLCKKMAPPL VTLLSAEPEI QYVALRNINL IVQKRPTILA HEIKVFFCKY NDPIYVKMEK LEIMIKLASD RNIDQVLLEF KEYATEVDVD FVRKAVRAIG 401: RCAIKLERAA ERCISVLLEL IKIKVNYVVQ EAIIVIKDIF RRYPNTYESI IATLCESLDT LDEPEAKASM IWIIGEYAER IDNADELLES FLENFPEEPA 501: QVQLQLLTAT VKLFLKKPTE GPQQMIQVVL NNATVETDNP DLRDRAYIYW RLLSTDPEAA KDVVLAEKPV ISDDSNQLDP SLLDELLTNI STLSSVYHKP 601: PEAFVTRLKT TVQKTEDEDF AEGSEAGYSS SNPVDSAASP PGNIPQPSGR QPAPAVPAPV PDLLGDLMGL DNAAIVPVDD PITQSGPPLP VVVPASSGQG 701: LQISAQLSRK DGQVFYSMLF ENNSQSVLDG FMIQFNKNTF GLAAAGSLQI PPLHPATSAR TMLPMVLFQN MSAGPPSSLL QVAVKNNQQP VWYFTDKIIL 801: HALFGEDGRM ERGTFLETWR SLPDSNEVLK EFPGITITSV ESTIELLTAF NMFFIAKRKN GNQDVIYLSA KDPRDVPFLI ELTAMVGQPG LKCAVKTPTP 901: EIAPLFFEAL ELLFKA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)