AT4G11350.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.815 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein of unknown function (DUF604) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein of unknown function (DUF604); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF604) (TAIR:AT4G23490.1); Has 568 Blast hits to 557 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 181; Plants - 281; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:6901714..6904160 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58211.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.64 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||||||
| Length | 507 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKGNQKDSSE KPIWDRSSSG ISMTRPGRLI IWLILFISVT YIIYTLKIVS TTHPCEDLTS ESILQQRPEK KAVTVTVKAV PAEQEATDLN HVVFGIAASS 101: KLWKQRKEYI KIWYKPKKMR GYVWLDEEVK IKSETGDQES LPSVRISGDT SSFPYTNKQG HRSAIRISRI VSETLMSLDS ESKKNVRWFV MGDDDTVFVT 201: DNLIRVLRKY DHEQMYYIGS LSESHLQNII FSYGMAYGGG GFAISYPLAV ALSKMQDQCI QRYPALYGSD DRMQACMAEL GVPLTKEIGF HQYDVHGNLF 301: GLLAAHPITP FVSMHHLDVV EPIFPNMTRV RAIKKLTTPM KIDSAALLQQ SICYDKHKSW TISVSWGFAV QVFRGSFSPR EMEMPSRTFL NWYKRADYTA 401: YAFNTRPVSR NHCQKPFVFH MSSAKFDPQL NTTVSEYTRH RVPQPACRWD MANPEEINTI VVYKKPDPHL WNRSPRRNCC RVLQTKRNNT LWINVGVCRA 501: GEVTEVK |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)