AT4G11340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.879 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G45000.1); Has 1603 Blast hits to 1489 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 1599; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:6894208..6899130 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56974.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.21 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||
| Length | 495 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNLLERRQLC DSCEGSDSCE IDGHVGKETT PKLFNRARIL GSVLNGLLPC TIILLTIDAN FGPMIANLRR ARFRVILVKS IRSRAFKLEP DSRNPYPPWD 101: FEGLEHNFYE MFATISQLIP FEFSLYMIHQ HAVESIFLND ADDDEWVMII ITHYHLDLDK TEMIECKAVA AIRDLICPRL GIIRSSSEGA VEIHIMVLLV 201: EAAWFLESLT EKVLAVKGRA PPQHQVFVSF RGSDVRYNFF SFLKDALIKN GINVVTDEDA PRGKPIDENL LKLIKDSRIA VVIFSENYPE STWCLDELVE 301: IEKQMDLKML DSCPIFFEVE TCHVKLQVAR STFNYNLLQL EHDERKKARQ ISKKAWEDAE KRFEGWRKAL ISVASRLGLT YKKGSNQATF VNEIVEKVKA 401: MLDNVSSSHI TPQHQVYISF RSREIRNKFS SLLRAALRRS GINVLLDDEN ITRIESRDEV DRLFCRVSRV KDRTSVHYQN LQELDVVLEE TAGDE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)