AT4G11230.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Riboflavin synthase-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Riboflavin synthase-like superfamily protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: oxidation reduction; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), NADPH oxidase Respiratory burst (InterPro:IPR013623), Ferric reductase, NAD binding (InterPro:IPR013121), Cytochrome b245, heavy chain (InterPro:IPR000778), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130); BEST Arabidopsis thaliana protein match is: respiratory burst oxidase protein F (TAIR:AT1G64060.1); Has 2278 Blast hits to 2159 proteins in 340 species: Archae - 6; Bacteria - 242; Metazoa - 694; Fungi - 630; Plants - 513; Viruses - 0; Other Eukaryotes - 193 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:6840791..6845587 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 106958.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.58 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 941 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSMSFSGGTH NDRWGSDLAS AGEFTQSFPS LPATYSPSPS SSSSSGEELL EVTIEFPSGV IINIDSVTGT GTDISGTDLE ITSCSDSGSG SRSLSLGWSA 101: SSERLTAGTN SKQQIQKISR RGYGYSSRSA PEPVVPHRGE ITDSVNLPRA LSQRPTRPNR DGSGTERAIH GLKFISSKEN GIVDWNDVQN NFAHLSKDGY 201: LFKSDFAHCI GLENENSKEF ADELFDALCR RRRIMVDKIN LQELYEFWYQ ITDESFDSRL QIFFNMVKNG DGRITENEVK EIIILSASAN NLSRLRERAE 301: EYAALIMEEL APDGLYSQYI ELKDLEILLL EKDISHSYSL PFSQTSRALS QNLKDRRWRM SRNLLYSLQD NWKRIWVLTL WFVIMAWLFM WKCYQYKHKD 401: AFHVMGYCLV MAKGAAETLK FNMALILLPV CRNTITYLRS TALSHSVPFD DCINFHKTIS VAIISAMLLH ATSHLACDFP RILASTDTDY KRYLVKYFGV 501: TRPTYFGLVN TPVGITGIIM VAFMLIAFTL ASRRCRRNLT KLPKPFDKLT GYNAFWYSHH LLLTVYVLLV IHGVSLYLEH KWYRKTVWMY LAVPVLLYVG 601: ERIFRFFRSR LYTVEICKVV IYPGNVVVLR MSKPTSFDYK SGQYVFVQCP SVSKFEWHPF SITSSPGDDY LSIHIRQRGD WTEGIKKAFS VVCHAPEAGK 701: SGLLRADVPN QRSFPELLID GPYGAPAQDH WKYDVVLLVG LGIGATPFVS ILRDLLNNII KQQEQAECIS GSCSNSNISS DHSFSCLNSE AASRIPQTQR 801: KTLNTKNAYF YWVTREQGSF DWFKEIMNEI ADSDRKGVIE MHNYLTSVYE EGDTRSNLLT MIQTLNHAKN GVDIFSGTKV RTHFGRPKWK KVLSKISTKH 901: RNARIGVFYC GVPSLGKELS TLCHEFNQTG ITRFDFHKEQ F |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)