suba logo
AT4G10800.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.638
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT3G05675.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IDYVeggNOG:ENOG410XSQ4EMBL:AF080118EMBL:AL049525
EMBL:AL161518EMBL:AY065352EMBL:AY117178EMBL:CP002687
EnsemblPlants:AT4G10800EnsemblPlants:AT4G10800.1entrez:826676GeneID:826676
Gramene:AT4G10800.1hmmpanther:PTHR31060hmmpanther:PTHR31060:SF8HOGENOM:HOG000241670
IntAct:O81632KEGG:ath:AT4G10800OMA:PRMELMKPhylomeDB:O81632
PIR:T01895Proteomes:UP000006548RefSeq:NP_192818.1TAIR:AT4G10800
UniGene:At.64678UniProt:O81632
Coordinates (TAIR10) chr4:+:6643678..6644529
Molecular Weight (calculated) 32231.50 Da
IEP (calculated) 4.46
GRAVY (calculated) 0.16
Length 283 amino acids
Sequence (TAIR10)
(BLAST)
001: MQDDVIDVSL NTKNVFLSAL HFAMSIDTLK NSPELVDELK TSAQEQVEFM LSEDEEVRLL ISEEEVKSVV RLGISNVISM LLDRLSSLLV ILPECTEFSV
101: LKTLYDIEWL CKVLPRMELM KDLVVKWTDA SSEILVIAQK CELDSRILGV KVKLVEVTGK ILEAVGYGIV IVPSKSRTCL LKIWLPFIRR LKTLVDAEGC
201: EYEYRMDEDL CEFIEGSMVS LVLTLPSNDQ AEVFGEWMRG IGLEGVKFPD LSEAFEVWCY RSKSAKRRLV ERCDRLAIVN LDH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)