AT4G10670.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GTC2 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Homologous to yeast SPT16, a general chromatin factor required for transcription | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
GTC2; CONTAINS InterPro DOMAIN/s: FACT complex subunit Spt16p/Cdc68p (InterPro:IPR013953); BEST Arabidopsis thaliana protein match is: global transcription factor C (TAIR:AT4G10710.1); Has 432 Blast hits to 431 proteins in 209 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 147; Plants - 73; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:6584727..6585758 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39441.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.96 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||
| Length | 343 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MITVDHKSDT VLLPIYGRMV PFNVTTIRTV LGNQNTIRVI FNVPGTPLNP NDSLKNKDAI YLKEVSFRTK DSRHSSDVVQ QVKSLRRKVM ARESERAERT 101: SLVNQEKLQI VRNNSKPLSL SNLWIRPPFS GRKKNRGTLE AHVNGFRYST TNERVDVLFA NIKHAFFQPA EKEMTTLLHF HLHNHIMVGT KKTKDVQFYV 201: EVMDVVQSLG GRRRSSAYDA DEIVEEQRER DRKNKINMDF NHFANQVNDM WQLPQFASLS LEFDQPLREF GFNGVPHKTS TFIIPTSSCL VELTESPFLV 301: VCLSEIEIVN LERVGFGQKS FDMAIIFKDL KKDVLRVDSV PTS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)