AT4G10640.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : IQ-domain 16 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
IQ-domain 16 (IQD16); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 17 (TAIR:AT4G00820.1); Has 775 Blast hits to 774 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 3; Plants - 758; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:6571999..6574312 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48720.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.77 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.81 | ||||||||||||||||||||||||||||||||
| Length | 423 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKKNGTSWF TAVKKILWSP SKDSDKKTHH HKETDIKRKE KKGWIFRKTK LETTNSVLQH TVRTVEAEEK EKPPVIVSSV EEGVTEIVKL TATPGFIRRH 101: WAAIIIQTAF RGYLSRRALR ALKGIVKLQA LVRGNNVRNQ AKLTLRCIKA LVRVQDQVLN HHQQQRSRVL LSPPSRNYNI EARRNSMFAE SNGFWDTKTY 201: LQDIRSRRSL SRDMNRCNNE FYSEETELIL QKKLEIAIKR EKAQALALSN QIRSRSSRNQ SAGDDRELLE RTQWLDRWMA TKQWDDTITN STNVRDPIKT 301: LEAVTTHHHQ RSYPATPPSC RASRSVMVRS ASPRIPCSPS SMQPNYMSAT ESAKAKARTQ STPRRRPMTA KKRLCYAEEE SLRSPSFKSC LWGDHESDYS 401: CCYGDGFAGK ISPCSTTELR WLK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)