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AT4G10560.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.910
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Cysteine/Histidine-rich C1 domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
maternal effect embryo arrest 53 (MEE53); FUNCTIONS IN: zinc ion binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT4G02540.1); Has 1438 Blast hits to 607 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1438; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AF118222EMBL:AL049523EMBL:AL161517EMBL:CP002687
EnsemblPlants:AT4G10560EnsemblPlants:AT4G10560.1entrez:826648GeneID:826648
GO:GO:0008270GO:GO:0009793GO:GO:0047134Gramene:AT4G10560.1
hmmpanther:PTHR32410hmmpanther:PTHR32410:SF152HOGENOM:HOG000064693InterPro:IPR004146
InterPro:IPR011424KEGG:ath:AT4G10560Pfam:PF03107Pfam:PF07649
PhylomeDB:Q9ZSB4PIR:T04191Proteomes:UP000006548RefSeq:NP_192794.1
SMR:Q9ZSB4SUPFAM:SSF57889TAIR:AT4G10560tair10-symbols:MEE53
UniGene:At.65347UniProt:Q9ZSB4
Coordinates (TAIR10) chr4:-:6520771..6522882
Molecular Weight (calculated) 81401.20 Da
IEP (calculated) 5.84
GRAVY (calculated) -0.25
Length 703 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSELELISL ISQLISLPKI LDSKWNSVTH SEIISLIAQI ISLVSSMDLH SQPKPESEFM SLVTQAISLF DSMDLNPELS PLSELISLLS QIISTDSDSD
101: SNRKVEWDLD RPLCETLFGQ PEPELVSLIY QIFSLVSSIN SKSEKFISLC PQLLVELEKG NFHVSEYFQP WGKWYCLPGN WVKFKFTGED ATYFGCKGCN
201: GKNHEEYEQA PDEIKHHLHR KHSLQLVFFS EGKERKCYCC DDDLEKVIYC CVSCDYAMNM ACAKKPPVLS IDHPKWHEHT LVLFPRRAFL TCNLCGLADA
301: RSPLYMCPPC DFVVHLRCID LPRVIRISRH HHRISFTPSF DQERLSCGVC QKNIDNDYGG YSCIKEGCFY AAHSKCATQR NVWDGKELEG EQEEEIKEVE
401: PFVKISDGII QHFSHQHHHL RLDDNINRDY DENKECQACI RPIYFGNFYS CMQCEFILHE ECANLFRQIY HPIHPHMLSL GYDNIVDHEV MCAAYPSLWT
501: AGFFYECGKE GCDFKLPVQF ATTSEPLVHE SHMHPLFLTS KPEEDPRRCS VCKESRYART NETFNCIECD FALCFVCATL PQKVRYKHDK HVLTLFYGNE
601: TSTITYWCEI CEGTIDPTKR FYVCDEYCCL TLHIKCLLGW DLYMKHGSSS FYLEKTVDVL SNNHHMTRPI CCYCEKRCPY KICLEWSGSI YCSSDCIFTF
701: LIF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)