AT4G10420.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.993 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : FBD / Leucine Rich Repeat domains containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
FBD / Leucine Rich Repeat domains containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT4G10400.2); Has 1022 Blast hits to 997 proteins in 23 species: Archae - 0; Bacteria - 14; Metazoa - 18; Fungi - 0; Plants - 987; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:6453085..6454209 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37155.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.50 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.02 | ||||||||||||||||||||||||||||||||
| Length | 322 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MWVVVVLSRY VRELEIYSSC YQDKQNILPS SLYTCKSLVI LKLNGGILMD VPRMVCLPSL KTLVLKGVNY FKQESLQRLL SNCPVLEDLV VNLCHHDNMG 101: KFIVIVPSLQ RLSLYIGYKR VLDEFVIDTP SLEYFKLVDR NYDSHPCLIE NMPKLTEAYV DVRSTDLQSL IGSITSVKRL IISSKAMFGD GYIFNRLERL 201: TLHVLEENPS NLLSQFLKDS PNLQELEYFS ELDDSYENMR MFPWNQPSIV PECLLSSLQK FTWSQYLGRT QDRDIAVYIL KNACCLRNAT IDSYTCLVPE 301: LKMIKELTRS SRASTTCELN FS |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)