AT4G10220.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.545 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of Unknown Function (DUF239) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of Unknown Function (DUF239); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: central cell, male gametophyte; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT4G10210.1); Has 656 Blast hits to 621 proteins in 25 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 8; Plants - 635; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:6362189..6365079 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 45168.10 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.16 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||
| Length | 400 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKMKLGCALP MTCMILACYI ICGSLLMSHC HGVIKEAKTL KSNEDLEIEH KLKLINKPAF KIVKTINGER YGCVDFYKQP GLDHSSMKNH TFHHKMRMSY 101: SEGSKMKRKT HRNTTFGHFW ENGVGCPIGT VPIPRVTKDA LLRMKSFDSD NSNPQSSWSK TYKPASSIDD HHFAVVRTTK GTRSYNGASM NINTFTPSVG 201: PMQFSASRMH FQIGNEFIQV GWIVHPQLYH DFNSRIFVFT KSGGNACYNL FCPDGSGMIL VRQDLTPGLL AEQKSIDFAI MKDKINGNWW LLMGTSWEEV 301: GFWPSSRFKE SSGTMVEWGG EVYSPSPPNP PMGNSHYPKG SPKVDSYVRL ITTVDENYNT DKTVKNTERY SDSCYKVRDA TETFWSHVGH LIIYGGPGCK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)