AT4G09660.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.833 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Zinc finger, TTF-type (InterPro:IPR006580); BEST Arabidopsis thaliana protein match is: TTF-type zinc finger protein with HAT dimerisation domain (TAIR:AT1G19260.1); Has 839 Blast hits to 796 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 438; Fungi - 0; Plants - 401; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:6104446..6106607 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 76934.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.30 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||
| Length | 664 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYRFMKRKSP PPPDINFNKL PSDPAKRKSI LSYHLNQRDE VRREYLIRGP CQPRGHKFKQ IVIGKVLRRF NPKWFDLYGD WLEYSVEKEK AFCLYCYLFR 101: DQAGNQGGSD SFLSTGFCSW NKADRLDQHV GLDVNSFHNN AKRKCEDLMR QGLSFRGHDE SEESTNKGNF LELLKYTAGQ NEVVKKVVLK NAPKNNQMTS 201: PPIQKDIVHC FSEEVTRSII EEMDNDVFGL LVDESADASN KEQMTVVFRF VDKYGVVKER FIGVIHVKET SSLSLKSAID SLFAKYGLSL KKLRGQGYDG 301: ASNMKGEFNG LRSLILKEIA KKHVEVGEFF DMISVLLNVV GASCTRKDKI REIHRQKVEE KISNGEIKTG TRLNQELSLQ RPGNTRWGSH YKTLLRLEEL 401: FSSIVIVLEY IQDEGTDTTK RQQAYGILKY FHTFDFVFYL ELMLLVMGLT DSLSKALQRK DQDILNVISL VKTTKCQLQK VRDDGWDAFM AEVSSFSEKN 501: NTAMLKMEEE FVDSRRPRKK SGITNLHHYK VDCFYTVLDM QLQEFNDRFD EVNSELLICM SSLSPIDSFC QFDKSMLVRL TEFYPDEFSF VERRSLDHQL 601: EIYLDNVKND ERFTDLKCFG DLARVMVETR KHLSHPLVYR LLKLSLILPV ATATVERCFS AMMC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)