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AT4G09640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF803)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF803); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF803 (InterPro:IPR008521); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF803) (TAIR:AT1G34470.1); Has 1257 Blast hits to 1237 proteins in 219 species: Archae - 2; Bacteria - 93; Metazoa - 420; Fungi - 376; Plants - 263; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNR8eggNOG:KOG2922EMBL:AK228399EMBL:AL161515
EMBL:AL161831EMBL:BT005717EMBL:CP002687EnsemblPlants:AT4G09640
EnsemblPlants:AT4G09640.1entrez:826550GeneID:826550Genevisible:F4JKQ7
GO:GO:0005769GO:GO:0005886GO:GO:0015095GO:GO:0015693
GO:GO:0016021Gramene:AT4G09640.1hmmpanther:PTHR12570hmmpanther:PTHR12570:SF21
InParanoid:F4JKQ7InterPro:IPR008521KEGG:ath:AT4G09640OMA:WVFTVIV
PANTHER:PTHR12570PaxDb:F4JKQ7Pfam:F4JKQ7Pfam:PF05653
PIR:F85098PRIDE:F4JKQ7PRO:PR:F4JKQ7ProteinModelPortal:F4JKQ7
Proteomes:UP000006548RefSeq:NP_192702.2SUPFAM:0043518TAIR:AT4G09640
TMHMM:TMhelixUniGene:At.4232UniProt:F4JKQ7
Coordinates (TAIR10) chr4:-:6088433..6090604
Molecular Weight (calculated) 41863.30 Da
IEP (calculated) 7.16
GRAVY (calculated) 0.48
Length 386 amino acids
Sequence (TAIR10)
(BLAST)
001: MVYSSGSWRD AYKGMSSDNV KGLVLALSSS IFIGASFIVK KKGLKKAGAS GLRAGSGGYS YLLEPLWWIG MITMIVGEIA NFAAYAFAPA ILVTPLGALS
101: IIISASLAHI ILQEKLHTFG ILGCALCIVG SVTIVLHAPQ EQDIVSVLEV WNLATEPAFL FYAAAVVGAA IVLIVQFIPL YGQSHVMVYI GVCSLIGSLS
201: VMSVKALGIA LKLTFSGTNQ LGYPQTWVFT VIVLFCVITQ MNYLNKALDT FNTAVVSPIY YVMFTSLTIL ASVIMFKDWD RQSGTQIMTE LCGFVTILSG
301: TFLLHTTTDM VDGESKGNLS SEEDSHLLLR IPKHSEDSNG FVQDGIILSL RRQESAKSPR PARQNKQLED DLEAVPLRRQ ESSLRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)