AT4G09430.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.923 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) (TAIR:AT1G72840.2); Has 19342 Blast hits to 14826 proteins in 563 species: Archae - 8; Bacteria - 943; Metazoa - 2203; Fungi - 31; Plants - 15808; Viruses - 2; Other Eukaryotes - 347 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:5970932..5975375 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 118378.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.66 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1039 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASSSTSSPT RVKEYDVFLS FRGADTRNNI VSYLHKALVD VGIRTFKDDK ELEEGDIISE KLVNAIQTSW FAVVVLSEKY VTSSWCLEEL RHIMELSIQD 0101: DIIVVPIFYK VEPSDVRYQK NSFEVKLQHY RDPEKILKWK GALTQVGNMS GKHFQTCSDE ATNIAEIVSK ISNRLRKMKP TDLINLVGMD AHMEKMQLLL 0201: DKEPKSEVRM IGILGMGGIG KTAIANYLYN QFSHEYWAHC FIEDAWNTND PTHLQRKLLS HICNDENAKL FTREAGAMKI KGILKHKKFF LVIDGVNKAE 0301: QVHALAKERS WFGPGSLIII TTRDRGLLNS CGVNNVYEVK CLDSKDALQV FEKFAFGGRN PPFHGSERLF TRASQLAHGL PYALVAFASH LSEQTTIEGW 0401: EDELFRLEDY PQKNVEEILR ASYDDLDYYE QSVFLQVACL FNGSFLWLIR AFLGKLGSRI NSLRAKSLLD ISNDGRLIMH FLVEQIGKEI VRQQSNCIPS 0501: EQKFLWKPEE IYDVLARNIF LKHVVDITSK LQLISDVSSI THGLKLLHWD AYPLETLPFS FQSSTLVEIN LRYSNLKHFW DETKVYRSKQ LPNLRRLDVT 0601: GSTSLVELPD LSDSMNLEEL IMEGCRSLRQ TPWSLNRLPL RKLNMVKCDS LMGLLLVTDD HNQPKASRPS PYRHINLLLL DTVTALSSLT ELSIQGEISV 0701: KLLHTLIGSA EHLSFTCEQQ IPDQLKITMA QKTGSIQPLH LIKTLVIERF NYGAREAPFS CQSFSSFPCL TELKLINLSI REIPQDIDCL LSLRKMDLTG 0801: NDFVHLPKTM AQLTKLECLT LRNCRQLKAL PLLTPTLTLP GLDNQPRGLI ELCIDNCKNL QSLQDQLLCY NTSLAYLDLS NHDFERIPTS IRHLSSLNTL 0901: CLKNCKKLKY VEELPLSLNH LYAHGCDYLE NVTLSPNHTI KHLDLRDCPR LKQSEQIKTL VSNERHGEAF GLRSGSSGFS NYSQNPKTSG REIPKTALPK 1001: LGLQLKLPQT HTEIVILCGA RLTTNKINME HHFSCHFIL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)