AT4G09420.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.949 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS class) | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS class); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: shoot apex, cotyledon, leaf whorl, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, 4 leaf senescence stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS class) (TAIR:AT1G72850.1); Has 8163 Blast hits to 8050 proteins in 270 species: Archae - 0; Bacteria - 112; Metazoa - 6; Fungi - 2; Plants - 8040; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:5962319..5963776 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51352.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.04 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||
| Length | 457 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYSSSSSSTP KFDVFLSFSV EAETLVSDLR SSFSENGITM KDDDLEKGVS SLGSERSEGI RESKVAVVVI SQSYAISAQC LNELQTIVNF HDERRISILP 101: IFYGVDYDDV RNQIKELAAS FRKLGKEYPS EKVQAWMIAL IKLINISRSD SRIHDDETTI DMVITSQVKQ ILLDKDKQIN LKATISHTVS NKQINSLTTK 201: NVGLIGLDRH MLALNELLDL KSNEEVRLIG ICGQGGVGKT TLARYVYEEL FKNFHAHVFV DNAGKIYKQD TDESHSQKSL TSKEIQEGTQ TVTRTLTVAS 301: DFIKSTVSHQ RSLLVVDCVD NIKQLEEIAN IVGLCFPGSR VILVTQDKKL LDDFGVEHVY EVQSLRYDEA LQVFSQSAFN QQHPPASFES LSFRAVRVAG 401: FLPLLLKILG SSLQDKDGKY WEKELQRLEG GQEKAIMEVM KKSCTREKVP TFIFPLN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)