AT4G09300.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.946 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : LisH and RanBPM domains containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
LisH and RanBPM domains containing protein; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), Ran binding protein, CRA domain (InterPro:IPR019589), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT1G61150.1); Has 506 Blast hits to 506 proteins in 150 species: Archae - 0; Bacteria - 2; Metazoa - 197; Fungi - 89; Plants - 154; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:5899008..5900689 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 25921.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.41 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||||||||||||||
| Length | 224 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: METPKIVVTS EDWESKLSDV EILIEDMNRL VMNLLVAEGY REAAEKFKEE SITMPEEDLA SMNERLEVIK AIESRNLEDA IEKLNALNPE IIKTSFHLHQ 101: QMLIELIREK KTEEAVAFAQ EKLAPLAEEN EALQRELEKT VCILVTEGLP NCPSRELFHN SQWIRTASHV NEAIHTSQTG EKGPELERLL KELIWTQNQL 201: DEKTVYVYPR MNDFSTGQLI YRPE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)