AT4G08990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA (cytosine-5-)-methyltransferase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNA (cytosine-5-)-methyltransferase family protein; FUNCTIONS IN: DNA binding, DNA (cytosine-5-)-methyltransferase activity; INVOLVED IN: DNA methylation; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA (cytosine-5)-methyltransferase 1 (InterPro:IPR017198), DNA methylase, C-5 cytosine-specific (InterPro:IPR001525), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), DNA methylase, C-5 cytosine-specific, active site (InterPro:IPR018117); BEST Arabidopsis thaliana protein match is: DNA methyltransferase 2 (TAIR:AT4G14140.1); Has 7214 Blast hits to 6137 proteins in 1440 species: Archae - 249; Bacteria - 4362; Metazoa - 525; Fungi - 274; Plants - 335; Viruses - 111; Other Eukaryotes - 1358 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:5764781..5770496 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 171165.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.95 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.50 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1512 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: METKVGKQKK RSVDSNDDVS KERRPKRAAA CRNFKEKPLR ISDKSETVEA KKEQNVVEEI VAIQLTSSLE SNDDPRPNRR LTDFVLHNSD GVPQPVEMLE 0101: LGDIFLEGVV LPLGDDKNEE KGVRFQSFGR VENWNISGYE DGSPGIWIST ALADYDCRKP ASKYKKIYDY FFEKACACVE VFKSLSKNPD TSLDELLAAV 0201: ARSMSGSKIF SSGGAIQEFV ISQGEFIYNQ LAGLDETAKN HETCFVENSV LVSLRDHESS KIHKALSNVA LRIDESQLVK SDHLVDGAEA EDVRYAKLIQ 0301: EEEYRISMER SRNKRSSTTS ASNKFYIKIN EHEIANDYPL PSYYKNTKEE TDELLLFEPG YEVDTRDLPC RTLHNWALYN SDSRMISLEV LPMRPCAEID 0401: VTVFGSGVVA EDDGSGFCLD DSESSTSTQS NVHDGMNIFL SQIKEWMIEF GAEMIFVTLR TDMAWYRLGK PSKQYAPWFE TVMKTVRVAI SIFNMLMRES 0501: RVAKLSYANV IKRLCGLEEN DKAYISSKLL DVERYVVVHG QIILQLFEEY PDKDIKRCPF VTGLASKMQD IHHTKWIIKR KKKILQKGKN LNPRAGLAHV 0601: VTRMKPMQAT TTRLVNRIWG EFYSIYSPEV PSEAIHEVEE EEIEEDEEED ENEEDDIEEE AVEVQKSHTP KKSRGNSEDM EIKWNGEILG ETSDGEPLYG 0701: RALVGGETVA VGSAVILEVD DPDETPAIYF VEFMFESSDQ CKMLHGKLLQ RGSETVIGTA ANERELFLTN ECLTVHLKDI KGTVSLDIRS RPWGHQYRKE 0801: NLVVDKLDRA RAEERKANGL PTEYYCKSLY SPERGGFFSL PRNDIGLGSG FCSSCKIKEE EEERSKTKLN ISKTGVFSNG IEYYNGDFVY VLPNYITKDG 0901: LKKGTSRRTT LKCGRNVGLK AFVVCQLLDV IVLEESRKAS NASFQVKLTR FYRPEDISEE KAYASDIQEL YYSHDTYILP PEALQGKCEV RKKNDMPLCR 1001: EYPILDHIFF CEVFYDSSTG YLKQFPANMK LKFSTIKDET LLREKKGKGV ETGTSSGILM KPDEVPKEMR LATLDIFAGC GGLSHGLEKA GVSNTKWAIE 1101: YEEPAGHAFK QNHPEATVFV DNCNVILRAI MEKCGDVDDC VSTVEAAELV AKLDENQKST LPLPGQADFI SGGPPCQGFS GMNRFSDGSW SKVQCEMILA 1201: FLSFADYFRP KYFLLENVKK FVTYNKGRTF QLTMASLLEI GYQVRFGILE AGTYGVSQPR KRVIIWAASP EEVLPEWPEP MHVFDNPGSK ISLPRGLHYD 1301: TVRNTKFGAP FRSITVRDTI GDLPLVENGE SKINKEYRTT PVSWFQKKIR GNMSVLTDHI CKGLNELNLI RCKKIPKRPG ADWRDLPDEN VTLSNGLVEK 1401: LRPLALSKTA KNHNEWKGLY GRLDWQGNLP ISITDPQPMG KVGMCFHPEQ DRIITVRECA RSQGFPDSYE FSGTTKHKHR QIGNAVPPPL AFALGRKLKE 1501: ALYLKSSLQH QS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)