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AT4G08875.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Putative membrane lipoprotein
Curator
Summary (TAIR10)
Encodes a defensin-like (DEFL) family protein.
Computational
Description (TAIR10)
Putative membrane lipoprotein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Putative membrane lipoprotein (TAIR:AT4G08869.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
EMBL:AF128396EMBL:AL161513EMBL:CP002687EnsemblPlants:AT4G08875
EnsemblPlants:AT4G08875.1entrez:3770076GeneID:3770076GO:GO:0005576
GO:GO:0031640GO:GO:0050832Gramene:AT4G08875.1HOGENOM:HOG000015163
KEGG:ath:AT4G08875OMA:CTISKLRPaxDb:Q2V3K2Pfam:Q2V3K2
Pfscan:PS51257PhylomeDB:Q2V3K2PRO:PR:Q2V3K2Proteomes:UP000006548
RefSeq:NP_001031603.1STRING:3702.AT4G08875.1TAIR:AT4G08875UniGene:At.63275
UniProt:Q2V3K2
Coordinates (TAIR10) chr4:-:5673818..5674220
Molecular Weight (calculated) 10425.00 Da
IEP (calculated) 9.19
GRAVY (calculated) 0.25
Length 93 amino acids
Sequence (TAIR10)
(BLAST)
1: MKITILFLTL LVLSSSCTSI ITKTMNSKET IYLDNPAVSP SIDQNLVDIH LGHSFVQGVM SFCYDCGKAC FRRGKNLARC QKFVCRCTIS KLR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)