AT4G08190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.614 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: small GTPase mediated signal transduction; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Ras (InterPro:IPR013753); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A2D (TAIR:AT5G59150.1); Has 5661 Blast hits to 5661 proteins in 329 species: Archae - 0; Bacteria - 0; Metazoa - 2847; Fungi - 521; Plants - 1337; Viruses - 0; Other Eukaryotes - 956 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:5174523..5175476 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 14272.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.59 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||||||||||||||||||||||
| Length | 127 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSLKDHVPK IMEKGEFDEI VDKEILNDLG GDDDLVLRRK PCGSSEGSCS SSNHEEEDGR SLMKERLQRW LRELRDHADS NIVIMMAGNK ADLNHLRSVA 101: EEDGHKTESL SFLETSALEA TNVEKAF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)