AT4G08180.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.968 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : OSBP(oxysterol binding protein)-related protein 1C | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
OSBP(oxysterol binding protein)-related protein 1C (ORP1C); FUNCTIONS IN: phosphoinositide binding, oxysterol binding; INVOLVED IN: steroid metabolic process, signal transduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Pleckstrin homology (InterPro:IPR001849), Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 1A (TAIR:AT2G31020.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:5169727..5173360 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 92640.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.56 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||||||||||
| Length | 813 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MHPFCCVTTV SDHSPSMPPL PEPQPPLPNY AADFGSARSE PIITRSASQS YNHSGQFNNN LIHSLSFNHH QSDVTDRLGQ RVLALPAAVR EPPVDVKIND 101: IVGNGIAGIL YKWVNYGRGW RPRWFVLQDG VLSYYKIHGP DKIFVSPETE KGSKVIGDES ARMISRHNRR GGSSSSCQLR RKPFGEVHLK VSSVRESRSD 201: DKRFSIFTGT KRLHLRAETR EDRTTWVEAL QAVKDMFPRM SNSELMAPTN NLAMSTEKIR LRLIEEGVSE LAIQDCEQIM KSEFSALQSQ LVLLKQKQWL 301: LIDTLRQLET EKVDLENTVV DESQRQADNG CSGELRHEKF SGTATESDDD NERGDAAEEE FDEEENTFFD TRDFLSSSSF KSSGSGFRTS SFSSDEDGFE 401: SEDDIDPSIK SIGCNYPRVK RRKNLPDPVE KEKSVSLWSM IKDNIGKDLT KVCLPVYFNE PLSSLQKCFE DLEYSYLLDR AFEYGKRGNS LMRILNVAAF 501: AVSGYASTEG RICKPFNPLL GETYEADYPD KGLRFFSEKV SHHPMVVACH CDGTGWKFWG DSNLRSKFWG RSIQLDPVGV LTLQFDDGEI LQWSKVTTSI 601: YNLILGKLYC DHYGTMRIEG SAEYSCKLKF KEQSIIDRNP HQVHGIVQNK SGKTVATMFG KWDESIHFVT GDCSGKGKLS EDMSGAQLLW KRSKPPGNAT 701: KYNLTRFAIT LNELTPGLKE RLPPTDSRLR PDQRYLENGE FEMANTEKLR LEQRQRQARK MQERGWKPRW FMKEKGSESY RYKGGYWEAR EDGSWVDCPD 801: IFGHIDSDQQ MIE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)