AT4G05540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.709 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G37150.1); Has 6000 Blast hits to 5190 proteins in 999 species: Archae - 178; Bacteria - 1607; Metazoa - 1364; Fungi - 1219; Plants - 628; Viruses - 117; Other Eukaryotes - 887 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:2818776..2821065 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 76844.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.18 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||
| Length | 689 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEISLESQGN VDDLNPLILA YVFSVGDELH FSVHSSKSIS IDEQYSFRSG FFLIYLTTNT RIWKALHNGD GNLSLIKSVL QANTADTEQS VSSRNWGNHV 101: LDIIRSANLN SSQESAILAC LETREIRDKT SVKLIWGPPG TGNTKTVATL LFALLSLSCK TVVCTPTNTA VVAVASRLLA LFKESSSTEH STYGLGNIVL 201: VGNRVRMGID ERGNDDLLNV FLDDRISKLG ELFSPSNEWE RSLEAVIDIL ENAESSYKKY LLLSERKENQ ETKNILTAFG EFVMKMFLGS KETPEKEEEI 301: ILTFGEFVME KFDGLSETMK KIQKDMVDLY THLPKSFLSS NDVKNMIVAR QALRQARTFL QEKQGSFTFD CFNKFVCVDC LRTLRLLSKR FEIPALLMKE 401: DIRTFCLQNA HIIFCTASGA AEMTAERAGS IDMLVVDEAA QLKECESVAA LQLQGLHHAV LIGDELQLPA MVQSEVCEKA KFVRSLFERL DSLGHKKHLL 501: NVQYRMHPSI SLFPNMEFYG GKISDAEIVK ESTYQKRFLQ GNMFGSFSFI NVGLGKEEFG DGHSPKNMVE IAVVSEILTN LLKVSSETKT KMSVGVISPY 601: KAQVSAIQER IGDKYTSVSD NLFTLNVRSV DGFQGGEEDI IIISTVRSNC NGNIGFLSNR QRANVALTRA RHCLWVIGNE RTLSLSGSI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)