AT4G05310.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.946 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ubiquitin-like superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G05270.1); Has 183 Blast hits to 148 proteins in 39 species: Archae - 0; Bacteria - 6; Metazoa - 12; Fungi - 9; Plants - 130; Viruses - 2; Other Eukaryotes - 24 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:2714765..2716012 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47426.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.98 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.55 | ||||||||||||||||||||||||||||||||
| Length | 415 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKFVVEILGG SSFEIEVERT DTLLVVKQKI EKSQRVPVSK QTLIVDGIFI LREDLNLDQC QIFHDSQIQL EVSPDVNPIH NNDDQIPQTE QSPPAPWISV 101: EEYFAEQDWP LTEEEIRKIY SYRPETTQDI SKIQDAHQTE ESPPSNSVKE TVNIQDSSVK FASKNNNDQV PPTKQFPQSN LVKKITNGKK RVRQMLVYVS 201: PYPGMNEVPT NILVQVKVTD EVKTLRGLMK LAQEGYIFTH NNQVLNEDQS YECNSVKPLD TIVIVPRRVI QETSKIQDSS VTVQVPQMEQ SPASNSVKEI 301: TDPKKKIKVY VVAASSECKG LKRFIEVDVN STDQVKILRT ELVESGRRGH IRMPHEGYFF VDRKKERVLN EDQSFEWNRV LPAETVYMVS GRDTHFASSF 401: TRGSKVTMLC AQKVL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)