AT4G05250.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.959 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ubiquitin-like superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G05230.1); Has 284 Blast hits to 257 proteins in 79 species: Archae - 0; Bacteria - 9; Metazoa - 86; Fungi - 10; Plants - 123; Viruses - 2; Other Eukaryotes - 54 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:2691460..2692416 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 36007.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.07 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||||||||||||||||||||||
| Length | 318 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDVFFETQSG DKFEIELGYW DTMLEIKEKI EKYQCIPVSK QTLIFQGVVL QDHLDIKQCV ILNHSHIQIF VEPNPNPNPN NAQVLQTDIS SPLNSFIDID 101: NFLDSPVSTS VKFGINNDDH VLQPEKSTPF NSSKEIDYFQ EYPISTSMEL VSNNSDQVPQ PEKSTPFNSY EEIDYIQDYP VSTSMELVSN NSDQVPPPEK 201: SPPLNSSKEI DYFQEYPVST SMELVSNNID QVPQPEKSPP LNSSKEIDYF QEYPVSTSME LVSNNNDQVP QPEKSPLLNS FKDIANTQGP SVKRIKLGGI 301: NNSHQDSTMR VNDLSTLI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)