AT4G04900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.875 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ROP-interactive CRIB motif-containing protein 10 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Most similar to RIC9 and RIC11 (subfamily group I). Gene is expressed predominantly in roots, leaves, and seedlings. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ROP-interactive CRIB motif-containing protein 10 (RIC10); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen tube growth; LOCATED IN: cytoplasm; EXPRESSED IN: seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); BEST Arabidopsis thaliana protein match is: PAK-box/P21-Rho-binding family protein (TAIR:AT4G21745.1); Has 685 Blast hits to 255 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 27; Plants - 173; Viruses - 0; Other Eukaryotes - 432 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:2486218..2487779 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 17020.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.82 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.64 | ||||||||||||||||||||||||||||||||||||||||
| Length | 156 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSMKMKGIYK GFKCISQIFA VEKERDEIEI GFPTDVKHVA HIGWEGSSGS APGWMSEFKV GAELLSPRPS SFSNARPSTS FFTSSSSTDF DQGSSQRGIS 101: DTLRDIPPVT PINLPKNNKK KSSRRKKSSS SSSSPKSSRS SVLSKSSYKS TVSRLI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)