AT4G03830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function, DUF601 | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function, DUF601; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: root, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF601 (InterPro:IPR006736); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51172.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:1790440..1792458 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 65148.80 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.30 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.72 | ||||||||||||||||||||||||
| Length | 578 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPPKRIQREV YSIDGQFGTY TSSQSTSRRL SLLKGAHGIP GRINLISPEA TDSPETPSPG HACAFEIFFS ECGLYFPLPD ILIDFMHEFG IALPQLCPNV 101: IRTILSLLTL AEEDNFLLSL PDLLQLYAIK KGRTQGTFFL SPRKGFRVFE DFPEKDEQWR KSFFFFRVNE LTFGEKTGLF VSEWSARAAS VDLLPISKTF 201: ASHFSSFVRQ DLGWESLSSD RVRASGKRLR SRTDLAISSP PFEPRIFSEE EMSAPSYRAE KKMERERAKQ EKDRLKSDKV VMTGTLEDSK LQAANKAKQP 301: RAEEDGGARQ KPSTLASKND APAPDSRTPS KATSSRDPSK RYGDKKRKQS DKDARSPARS VRVRTEERDA SPSQQKEKGK KGDSQDLVKS IPLNAPFLRD 401: TDNLLSSGHV SAPPLPFADL VRSFTHAGAP IPPLKELKPT NQENYLRFAE KLGELSDKDR EIESFKQNEE ENSRMVDRAN SVLSRMREAE ARVLALDIAN 501: TDLAAKLESG KNAYLAAIDN ENRARAELLA CEEKLRKLEE GQAALLADAR REERRKVRAQ FKDFTSKYQS FYAESEEV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)