AT4G03490.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.968 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ankyrin repeat family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G03500.1); Has 23858 Blast hits to 12012 proteins in 533 species: Archae - 27; Bacteria - 1611; Metazoa - 14070; Fungi - 1809; Plants - 2208; Viruses - 91; Other Eukaryotes - 4042 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:1549345..1552784 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72942.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.79 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.21 | ||||||||||||||||||||||||||||||||||||
| Length | 662 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGKVQEFEKV MEENEIPVLD QVTFQGNTIL HLAAIYGHDH LVRRILAYEL NILRNWKRGL NCNFVPSFSH YQTLLVRRNY KGDLALHVAA AAGHKLIVGL 101: LIDCLRQLPQ DITMVIGSEQ MVIGNIFRVS NNDGNTALHL SLKGNHVSVS LQLVREDRST CFLLDKEDVS PLYMAAEAGY VSLVEHMLRG LDASFVGKSV 201: LCAAVKSQNL DILTAVLESD SDLVESRDED GRTPLATAAS IGYDIGVQHM LTRFASSTQV AYIKNEDGSF PIHSACSARC TSALKVILKH HPDTIEMLNS 301: QGQNVLHVAA KSGNARAVGY LLRKSDVKRL INEQDIEGNT PLHLASSNSH PKVWLIWMAL VAAGTTRAPR VHLRADIPGL TTDEDLILKI HKDRVNTLLV 401: VATLVATMAF AAGLSVPLGY NSTEFKSNVK HSYEESAFHA FVICNSIAVY TAVISTVALI GTQLADLKCM LTTFKFIVPL LGFSIIAMSL AFVAGLYLVL 501: GHHYWLAIFV LASGGFYLMA LLLLIIPYAS PYTFTLSRSL NSLVQNMSKE DVDSVNQLVP APTEELALIK AIQVNRCIQG NIGVTSMMVP RKHTHNFRVP 601: VLVARQQNNS GLTALDIAEL NPNPTTSFER NRLRVWLCVF SCFGISYRQL GATVQFFICE KT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)