AT4G02180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.951 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DC1 domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DC1 domain-containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT4G01930.1); Has 3165 Blast hits to 732 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 0; Plants - 3102; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:959964..963517 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 113848.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.84 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||
| Length | 989 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGLINQWFPL DTLATPERIR MACFDEFTSP FYMTMDSEGV LMPLVHEHLM MPWNDLRKGD CCGLSKAVSV GYYCKSCDFF AHKKCGESSE FIQHPSHPNH 101: TLQLRSSEGC NSCNLCGRTI SDLFYRCDLC DFDVDLYCAK YPPPEVIDIP ETHHHKLNLH KELIEFNCDA KCGKITGAEF PYVCYECQLP FHVDCVWRPS 201: ELKHPSEVNH SYHSLHPLKL LSGQLPDNCD GKCRLCARKI DDRLFYHCSP CNFTLDLRCV LNPPQQSLLN LKAHDHQLTL LPRLLSFTCN ACGLNGDRSP 301: YTCVQCDFMI HQDCLDLPRV ININQHDHRV SRTSVPGVGN SKGVLLPWFH RKHIMMPWND MRKGDCCGSL ESVTDGFYCK SCDIFIHKKC GESSGIIDHS 401: SHPDHTLELN RYPNKSCNLC GRSKGVNVCY RCDHCYYQLD LYCAKYPPPE FIDIPETHHH KLTLLKERIE FDCDAKCGET GDGFAYKCPE CDLFFHVDCV 501: WHPPEVNHPL EVNHSYHPWH PLKLHTGQPP HYSDGTCRLC ARNIDDRLFY HCSPCNFTLD LRCVLNPPPQ SLLNLKAHDH QLILLPRLRS FTCNACGLSG 601: DRSPYICIQC DFMIHQDCLD LPRLINVNRH DHRVSRTSVL GVVNSVCGVC HQKVDWTCGG FSCQRCSSYV VHSKCATRRD VWNGKELEGV PEEIEDIEPY 701: VVIDDNTIQH FSHKEHYLRL HVNDVLCNDN KRCKACTHPI FLQSFYSCMD CDFLLHQNCA GFPRMKRHVL HNERLTLVTN ETKLFQCAPC DRWSNGFRYQ 801: HGYKSLDLQC GSISEPFVHP SHPDHPLYHT LLDGRNEICD GCKKSWYYVL SCIEDDCRFV LCFKCLTLPQ VVKHRVDDDP LLLCYGEKAC GKYWCDICEK 901: ETNPETWFYT CKDHQSSMHT MCVLGDSVGI MPKSTIMGWY KYYEVVLNNS ISRPVCEMCK SRCIFPTIMK ILEASNEYVC SLACVLERG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)