AT4G02100.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.906 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Heat shock protein DnaJ with tetratricopeptide repeat | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Heat shock protein DnaJ with tetratricopeptide repeat; FUNCTIONS IN: binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G47440.1); Has 318 Blast hits to 309 proteins in 95 species: Archae - 0; Bacteria - 4; Metazoa - 68; Fungi - 63; Plants - 160; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:930228..932049 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61053.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.43 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||
| Length | 546 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVYGEKKHW WLRNKKIVDK YMKEAKSLIA SQDPNDVKSA LNLLESALSV SPRYELALEL KARSLLYLRR YKDVADMLQD YIPSLKLAGG GEDSGIGSSE 101: LSFTHSSRES VKLLNDLPSH HHHHDSSFKC FSVSDLKKKV MAGLTKNCDE QGQWRYLVLG QACCHLGLME DAMVLLQTGK RLATAAFRRQ SICWSDDSFI 201: LFSSEDGGSS PPSSVVVTSA SQPRSESIAH VLSHIKLLLR RRAAALAALD AGLYTESIRH FSKILDSRRG APQGFLAQCF MHRASAYRSA GRIAESIADC 301: NKTLALDPSC LQALETRAAL LESVRCFPDS LHDLEHLKLL YNSILRDRKL PGPVWKRHNV RYREIPGKLC VLTTKIQQLK QKIANGEIGN VDYYALMGIR 401: RDCSRSELDR AYLLLNLKHK PERSMSFIDR FELTDDEEEL DSVKDRARMS TLLLYRLIQK GYSVVTSNIA AVEKQRKAIA AAVATESHRS NIIETPIRAV 501: AVAVNSNNNT NVVKGVFCRD LTVVGSLIAR TGFNQPIPVK YEALSC |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)