AT4G01930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.907 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, embryo, root, flower, seed; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT4G01910.1); Has 2022 Blast hits to 728 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 74; Fungi - 2; Plants - 1926; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:838802..840760 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75262.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.41 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||||||
| Length | 652 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSEGVSLPL IHKHHMLPWN DMRKGDCCRR FEAISDGYYC KTCDFFVHKS CGDRSSEYIE HPSHPSHALQ LLRKPGHTRN CNLCGISIKS LFYNCEICNF 101: NVHMYCAKYP PPQVIDISET HHHKLNLYKK PNYIDCGDKC GKLSYEFSYK CQECDLAFHV DCAWRPSESN LPLEVNHFYH SLHPLKLVRG KLPDYSDRKC 201: RLCGRYIGDR LFYHCSSCNF TLDMRCVLNP PQQSLLNLKA HDHQLTLLPR LDSFTCNACG LKGDRSPYVC FQCGFMIHQD CLDLPRVINI NRHDHRVSRT 301: SVLGVVKSVC GVCHQKVDWT CGGFSCQRCH GYVVHSKCAT RKDVWNGKEL EGVPEETEDI QPYVVIDENT IQHFSHKEHY LRLHVNGVLC DDNKWCSACT 401: HPICLQSFYG CMDCDFILHQ NCAGFRRMKW HVLHNERLTL VINEAEPFRC YACDRWSNGF RYHQGNITFD VRCGSIAEPF LHPSHPDHPL YHTLPDGGIK 501: ICNGCKNGFY DVLGCIEDDC RFAICFKCAT FPQVVKHRVD DHPLSLCYGE KASGKYWCDI CEKETNPEIW FYTCKDYQAS LHIECVVGAL SLLMPRSTIN 601: PWEKSYEVVL NNSASRPFCS YCELRCIFPI ILKRLGSSDN YVCSYFCALF CI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)