AT4G01770.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.994 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : rhamnogalacturonan xylosyltransferase 1 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with UDP-xylose-dependent xylosyltransferase activity, which transfers Xyl onto L-fucose and (albeit less efficiently) L-arabinose. The linkage to L-fucose was shown to be preferentially to the <i>O</i>-4 position. Analysis of mutant containing T-DNA insertion in this gene indicate that the RGXT1 protein might be involved in the synthesis of the α-D-Xyl-(1,3)-α-L-Fuc-(1,4)-L-Rha structure in pectic rhamnogalacturonan II. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
rhamnogalacturonan xylosyltransferase 1 (RGXT1); CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388), Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: rhamnogalacturonan xylosyltransferase 2 (TAIR:AT4G01750.1); Has 292 Blast hits to 289 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 261; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:764564..766596 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41176.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.42 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 361 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEQKQHILKQ STFSSSPSSY SSISDRPISL LSRNGLLLLL LALVLLLGVL LPWPGSPLFL FPNRLSSSLS PSPQSKWRDY TLAQAARFVA KNGTVIVCAV 101: SSPFLPFLNN WLISVSRQKH QDKVLVIAED YITLYKVNEK WPGHAVLIPP ALDSKTAFSF GSQGFFNFTA RRPQHLLQIL ELGYNVMYND VDMVWLQDPF 201: LYLEGSHDAY FTDDMPQIKP LNHSHDLPHP DRNGETYICS CMIYLRPTNG AKLLMKKWSE ELQSQAWSES IRFKANDQPA FNLALNKTAH QVDLYLLSQV 301: AFPTGGLYFK NEAWVQETKG KHVIVHNNYI IGYDRKMKRF QDYGLWLVDD HALESPLGKL E |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)