AT4G01660.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : ABC transporter 1 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes an ABC1-like protein, member of the ATH subfamily; putative ABC transporter; isolated by functional complementation of a yeast abc1 mutant | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ABC transporter 1 (ABC1); CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC2 homolog 13 (TAIR:AT5G64940.2); Has 8616 Blast hits to 8614 proteins in 1786 species: Archae - 122; Bacteria - 4355; Metazoa - 377; Fungi - 416; Plants - 667; Viruses - 9; Other Eukaryotes - 2670 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:708652..711095 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68631.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.54 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 623 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSWSKSFTR LVNGVSLVAK EIYNQSPELQ RARNGDLEGL ITSSGKKALV AATDLVGLTS GKLRELSIRR SKEPSVVYFD EGDNKDNVVA TPEVRSVNTK 101: PSEKIVDSKV LRNEFSDEVK NSNREGEIKV SGVEAGEIIG VRAVESGTVT EASSPSEVVP PVKRRRPRER KVPSTPMARA YGFFNLGAAL AWGAVKESTY 201: RMVNGTPMTP DNQPALSSLM SKENAERLAL GLCEMRGAAL KVGQMLSIQD ESLVPAPILN ALEYVRQGAD VMPRSQLNPV LDAELGSNWQ SKLTSFDYEP 301: LAAASIGQVH RAVTKDGLEV AMKIQYPGVA NSIESDIENV RRLLNYTNLI PKGLFLDRAI KVAKEELAQE CDYEIEAVSQ KRFRDLLSDT PGFYVPLVVD 401: ETSSKKILTT ELISGIPIDK VALLDQKTRD YVGRKMLELT LKELFVFRFM QTDPNWGNFL YNEATKTINL IDFGAARDYP KKFVDDYLRM VMACAEKDSE 501: GVIEMSRRLG FLTGDESDVM LDAHVQAGFI VGLPFAEPGG YAFRTNNIAS SISNLGATML KHRLSPPPDE AYSLHRKLSG AFLACIKLGA TVPCRDLLLQ 601: VYNKYQFDDE PQDPVVATSS VSS |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)