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AT4G01380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.956
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : plastocyanin-like domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: copper ion binding;electron carriers (TAIR:AT1G45063.2); Has 1293 Blast hits to 1200 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1293; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AL161491EMBL:CP002687EnsemblPlants:AT4G01380EnsemblPlants:AT4G01380.1
entrez:826657Gene3D:2.60.40.420GeneID:826657GO:GO:0009055
Gramene:AT4G01380.1hmmpanther:PTHR33021hmmpanther:PTHR33021:SF68HOGENOM:HOG000123648
InterPro:IPR003245InterPro:IPR008972KEGG:ath:AT4G01380Pfam:PF02298
Pfscan:PS51485PhylomeDB:Q9M135PIR:A85018ProDom:PD003122
PROSITE:PS51485Proteomes:UP000006548RefSeq:NP_192047.1SMR:Q9M135
STRING:3702.AT4G01380.1SUPFAM:SSF49503TAIR:AT4G01380UniGene:At.54079
UniProt:Q9M135
Coordinates (TAIR10) chr4:-:569148..570076
Molecular Weight (calculated) 23835.20 Da
IEP (calculated) 6.58
GRAVY (calculated) -0.25
Length 210 amino acids
Sequence (TAIR10)
(BLAST)
001: MGITRQSTRF HKPSLSTIET WFSIKLVFHV GDSLIFEHNH NLNDVTQVSG ALEYEFCDSS SPKAVYNPGH DISWCGSKGW SVPQESYFYY RWSEKTQFPI
101: GDSLLFEYDN EVNDVLEISG DLEFISCYPI SPVAVHMTGH DLVTLTEPGV HYFISSKTPG HCYAGLKLRV VVGPLTKAVP VPNVPTKKIE LSLMDRFNRW
201: LRTFGPQPHH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)