AT4G01340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.548 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : CHP-rich zinc finger protein-related | ||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CHP-rich zinc finger protein-related; BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT4G01350.1); Has 195 Blast hits to 185 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 195; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:554539..556961 | ||||||||||||||||
| Molecular Weight (calculated) | 25647.30 Da | ||||||||||||||||
| IEP (calculated) | 6.66 | ||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||
| Length | 226 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATTAVNLPI HEHPLYPSAR CIIGECDGCH VNGYMNDGHP LTLCCGEKEE PSVTLHAQCV LGDFSRLVLG QIYWFGRKKI EFEALPNNHN TRPLCIQCQS 101: RCKVSVILKK HNEDNRYSTS TDAYFMALSG VFDDDWANKA ILESEKRARE CEKDLLSYLL HGKHEIFAGL DKASADDTYR SVNNLWNSYP KDEEFERFGI 201: PSKRGRDYHG CIISLASFNS SFICKN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)