AT4G01180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.952 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : XH/XS domain-containing protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
XH/XS domain-containing protein; CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380), Domain of unknown function XH (InterPro:IPR005379); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT5G59390.1); Has 49488 Blast hits to 31983 proteins in 1865 species: Archae - 714; Bacteria - 6983; Metazoa - 22984; Fungi - 2858; Plants - 1632; Viruses - 165; Other Eukaryotes - 14152 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:501287..503394 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65468.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.21 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.07 | ||||||||||||||||||||||||||||
| Length | 554 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKKKQQKQEF VAETSEMNNN NECSGQDQQK RYVWPWVGLV ANVPTEVEPS GRRVGKSGST LRDEFTLKGF NPTRVKPIWN TKGHTGFALV EFAKDFKGFE 101: SAMQFEKSFD LDRHGKRDWK KGHRLRDDKL YGWLAREDDY NRSDTVGKNV KKKRDLKSIS QIVEEDQRKL YHLFENMCQT IEKNKQRKQQ LEQKVDETLE 201: SLEFHNLMLN NSYQEEIQKM EKNMQEFYQQ VLGGHEKSFA ELEAKREKLD ERARLIEQRA IKNEEEMEKT RLEREMIQKA MCEQNEANEE AMKLAEKHQK 301: EKEKLHKRIM EMEAKLNETQ ELELEIEKLK GTTNVMKHMV GCDGDKDIVE KIAKTQIELD ARETALHEKM MTLARKERAT NDEYQDARKE MIKVWKANEE 401: LMKQEKIRVK IMGELNPAPF LPAVMNKHKA MMLCSVWAAE IGDVQWTPFR VDESDGTPKQ KLHISQHSKC EMQRVVDEND EKLRMLKNQY GEEVYSEVVR 501: AKLEMEEHNA SGSYETEELW NYEENRKATI EEITDVMLKI RSKLAAMKNK RKRP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)