AT4G01023.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/U-box superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type/C3HC4-type RING finger) family protein (TAIR:AT5G06420.2); Has 1605 Blast hits to 1547 proteins in 476 species: Archae - 6; Bacteria - 22; Metazoa - 955; Fungi - 207; Plants - 131; Viruses - 8; Other Eukaryotes - 276 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:445844..446720 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 26397.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.28 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.64 | ||||||||||||||||||||||||||||||||||||
| Length | 236 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSDSDEAKTS EEESQLAEQE TETQEGEMTK NLKKRDLDAV EDEDSNNESS RLEKLEKKIK KETARKLETD FVLTGEEDDD ALPLACSICQ NPFLDPVVTN 101: CNHYFCDKCA LKHHTENDTC FVCNEPTLGL FDTAVEIKER IEEEREKARA MVKEVTAMLE KASTMADDAK GVAQKVVKMV EEIETMVEKV AAMATKAGET 201: ATMAADMVKE AEETMETAKA NMSKAFVVMK SVNWNV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)