AT4G00920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : COP1-interacting protein-related | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
COP1-interacting protein-related; BEST Arabidopsis thaliana protein match is: 4'-phosphopantetheinyl transferase superfamily (TAIR:AT2G02770.1); Has 278 Blast hits to 253 proteins in 77 species: Archae - 0; Bacteria - 14; Metazoa - 72; Fungi - 22; Plants - 72; Viruses - 1; Other Eukaryotes - 97 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:393767..395382 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 34560.90 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.60 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.66 | ||||||||||||||||||||||||
| Length | 314 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATRETNSSP EIRCVFVETN LDTRLGVLME RDDIVSTFKE KICKEHETCF PSFGNITISA LKVKCGGQFY HLVDSLILNT AFPSKETFLV VDVLRVEEKG 101: KMLTGETPLS NPNLLERETK TIKDVDKTKK RKLKSLDSAK RSRKKLSLVD QSSGKGVVEP FAIGKDLEKG EKSVATDIAL VDDENESHKD DDVRVVEDIN 201: QSADVENEGI NKDDGVDATS ESFPNSTGEK KPVTNILVLM APVPNKKKVG TKNNGGKDAD DKASTKEVTE VASSSRNVDH DVVMGDLQEN VEKVVKKSTK 301: KSKKKQSSDV VEEA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)