AT4G00540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : myb domain protein 3r2 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a putative c-myb-like transcription factor. Member of a class of domain proteins containing structural features of the vertebrate c-Myb proto-oncoprotein, including the presence of three Myb motifs (R1,R2,R3). | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
myb domain protein 3r2 (MYB3R2); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like protein (TAIR:AT4G32730.2); Has 13272 Blast hits to 8134 proteins in 555 species: Archae - 0; Bacteria - 0; Metazoa - 1137; Fungi - 983; Plants - 8207; Viruses - 4; Other Eukaryotes - 2941 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:234597..237356 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50034.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.52 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.86 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 437 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTESIDLNRS ESESDNNTDD VTPIFAIDDS SKGRVSGPTR RSTKGGWTAE EDQILTNVVK KYQGRNWKRI AECLPGSEEN RRNDVQCQHR WLKVLDPSLQ 101: KGAWKKEEDE LLSELVKDYM ENDRPPWSKI SKELPGRIGK QCRERWHNHL NPTIIKSPWT REEELILVQA QRGNGNKWAE IAKLLPGRTE NNIKNHWNCS 201: VKKRLEQFPS NLFSGVVYGS KPSSGFEYNF FNQRNTMVES CITSQIKEAA KSPQRDFLDL TLGLNWRSIS SSTSSLRGEE SVSSSVDSVC ARLNACLETP 301: QNSNNDTVCV KEVREMKERL RMAARTFDTP SIISKTSSPA SGLKRLRQKY DTPFPTDARS HMSSEEDHSV SASPSSKYRF VKRNTCSGSK PLERRLDFDF 401: LLWDEHGRRN GIVNFSVRIL PQKSDLKSGL VRPFWLR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)